User’s Guide - subMIT

Contents:

• Introduction and creating an account
• Getting started
• Access to subMIT
• Best practices
• Available software
• Batch computing
• User quota and storage at SubMIT
• Monitoring at submit
• GPU resources
• Data backup
• Conda and its benefits beyond python
• OpenMPI on SubMIT
• Using Globus on SubMIT
• Acknowledging subMIT

Back to the main subMIT webpage.

Tutorials and Examples

Tutorials:

• Tutorial 0: Introduction to the UNIX terminal
• Tutorial 1: Common software packages (python, Julia, MATLAB)
• Tutorial 2: Batch Job (HTCondor and Slurm)
• Tutorial 3: Containers (Podman and Singularity)
• Tutorial 4: Source Control (Git/Github) with Visual Studio Code (VSCode)
• Tutorial 5: Debugging Fortran code with Visual Studio Code (VSCode)
• Tutorial 6: Introduction to Pytorch Lightning
• Tutorial 7: Introduction to Snakemake

Examples of scripts can be found on our submit-examples GitHub repository.

Search tool and tags

• Search Page

• User’s Guide Tags
  • Conda (2)
  • Condor (4)
  • Containers (2)
  • GPU (4)
  • Globus (1)
  • Julia (2)
  • JupyterHub (3)
  • Mathematica (1)
  • OpenMPI (1)
  • Slurm (6)
  • VSCode (4)

Contributing

You can participate in the subMIT project by submitting bugs and feature requests to submit-help@mit.edu. If you see anything missing on our User’s Guide, you can make pull requests on our Github for anything from typos to additional documentation!

Archive - subMIT

Previous Upgrades:

• Move to AlmaLinux